Murakami joined Kashiwa Reysol as an apprentice professional in 2007. He turned full-time professional with Reysol at the start of the 2008 season. Murakami transferred to Albirex Niigata on 23 December 2010, for an undisclosed fee.
He made his club debut on 23 July 2011 against Kawasaki Frontale.
He moved to Ehime Football Club on 1 February 2014 on a free transfer.