Background
He was installed to the throne of Johor in 1564 by the Acehnese upon the death of his father, Sultan Alauddin Riayat Shah II, who died shortly after he was captured and brought back to Aceh after the Acehnese invasion of Johor.
He was installed to the throne of Johor in 1564 by the Acehnese upon the death of his father, Sultan Alauddin Riayat Shah II, who died shortly after he was captured and brought back to Aceh after the Acehnese invasion of Johor.
He was known as Raja Muda Perdana before he succeeded the throne. Muzaffar II moved his capital to Seluyut in 1565 from Johor Lama to assert his independence from the Acehnese. He died in 1570 of poison and was succeeded by Sultan Abdul Jalil Shah I.