Amos Bairoch is a Swiss bioinformatician and Professor of Bioinformatics at the Department of Human Protein Sciences of the University of Geneva where he leads the CALIPHO group at the Swiss Institute of Bioinformatics combining bioinformatics, curation, and experimental efforts to functionally characterize human proteins.
Education
His first project, as a Doctor of Philosophy student was the development of Personal Computer/Gene, an Mississippi-DOS based software package for the analysis of protein and nucleotide sequences. Personal Computer/Gene was commercialized, first by a Swiss company (Genofit) then by Intelligenetics in the United States which was later bought by Oxford Molecular.
Career
His main work is in the field of protein sequence analysis and more particularly in the development of databases and software tools for this purpose. His most important contribution is the input of human knowledge by careful manual annotation in protein-related data. While working on Personal Computer/Gene he started to develop an annotated protein sequence database which became Swiss-Prot and was first released in July 1986.
From 1988 onward it has been a collaborative project with the Data Library group of the European Molecular Biology Laboratory which later evolved into the European Bioinformatics Institute (EBI).
The Swiss-Prot database is the primary protein sequence resource in the world and has been a key research instrument for both bioinformaticians and laboratory-based scientists in a very wide range of applications. A measure of its success is the recent development of UniProt, the world"s most comprehensive catalogue of information on proteins.
UniProt is a central information resource of protein sequences and functions created by joining the information contained in Swiss-Prot, TrEMBL, and the American Protein Information Resource (PIR) databases. In 1988, he started to develop PROSITE, a database of protein families and domains.
A little while later he created ENZYME, a nomenclature database on enzymes as well as SeqAnalRef, a sequence analysis bibliographic reference database.
In collaboration with Ron Appel he initiated, in August 1993, the first molecular biology World Wide Web server, ExPASy. What was intended as a prototype grew rapidly into a major site that provides access to the many databases produced partially or completely in Geneva as well as many tools for the analysis of proteins (proteomics). In November 1997, together with Ron Appel and Denis Hochstrasser, he founded GeneBio (Geneva Bioinformatics Société Anonyme), a company involved in biological knowledge.
In April 2000, the above persons with Keith Rose and Robin Offord founded GeneProt (Geneva Proteomics), a high throughput proteomics company that ceased operations in 2005.
Since 2009, in the framework of the CALIPHO group, directed by himself and Lydie Lane, he is involved in the development of neXtProt a new resource which aims to provide life scientists with a broad spectrum of knowledge on all human proteins. According to Google Scholar and Scopus, As of 2015 his most highly-cited peer reviewed papers in scientific journals have been published in Nucleic Acids, the Biochemical Journal, Nature, Briefings in Bioinformatics, and the Database (journal).