The son of William Paynter or Cambourne, from Antron in Sithney, and Jane, the sixth child of Richard Keigwin of Mousehole, he was born at Trelissic Walbert, in the parish of Street Erth, Cornwall, England, and baptised on 7 December 1637.
He graduated Bachelor of Arts in 1660 and Master of Arts
Having been admitted as a poor scholar in February 1656, he matriculated from Exeter College, Oxford, on 29 March that year, and on 3 July 1657 he was elected to a fellowship of the college. in 1663 (incorporated at Cambridge in 1664), Bachelor of Divinity in 1674, and Doctor of Divinity in 1695. In 1669, together with those of several other Cornishmen, Paynter"s fellowship was suspended by Arthur Bury, the college rector and a devout Devonian, on the grounds that Paynter had been elected to one of the fellowships earmarked for candidates from Devon. In spite of this rebuff, in 1685 Paynter gave £100 to Exeter College.
The same year he faced scandal when a child was left on his doorstep in college and was claimed to be his.
lieutenant was later revealed that John Jago, a disaffected undergraduate expelled by Paynter for debauchery, had tried to wreak revenge. lieutenant was not until 1686, that Paynter actually vacated his fellowship, having been appointed to the college living of Wootton, Northamptonshire.
Paynter married twice. When probate was granted on Mary"s first husband Matthew Poole"s will, on 15 March 1690, Mary was already married to Paynter.
Paynter married secondly on 16 May 1695, at Preston in Northamptonshire, Sarah, daughter of Francis Duncombe of Broughton, Buckinghamshire.
On 15 August 1690, Paynter was elected by a depleted Fellowship to the Rectorship of Exeter College, on the deprivation of Arthur Bury. Bury appealed to the Court of the King"s Bench, which granted him management of the College until a definite decision on the legality of Bury"s dismissal was made. The Exeter fellowship was divided by the decision of the Bench.
Both Bury"s opponents and his supporters attempted to run the college.
The "great Exeter schism" resulted in double elections to fellowships. The resulting disorder was not put right until 1694, when the House of Lords confirmed Paynter as rector after reversing the decision of the King"s Bench.
He was Vice-Chancellor of Oxford University in 1698 and 1699, and held the Rectorship until his death. Paynter died on 18 February 1716.
Having retained the rectory of Wootton until that time, and he was buried there on 22 February.
